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When the mac and cheese craving hits, this Butternut Squash Mac and Cheese swoops in with all the creamy, cozy satisfaction, minus the heaviness. It’s quick (ready in under 25 minutes!), made right on the stovetop, and lightened up with real butternut squash for that subtle sweetness that makes every bite taste like fall.

A pan filled with creamy macaroni and cheese, stirred with a wooden spoon, sits on a green countertop next to plates, water glasses, and a bowl of shredded cheese.
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I was raised on mac and cheese. But for us, mac and cheese was something you made from the box. You had your dried pasta and your bag of dehydrated cheese product, and together they formed my childhood.

But with my now-knowledge as a nutritionist, I like to hide vegetables in seemingly innocent dishes. So this mac and cheese has a little secret. It packs in a few servings of veggies with pureed butternut, and is lightened up with rich and creamy yogurt! It’s a healthy pasta recipe that I think you’re going to love!

  • It’s ready in 25 minutes
  • It’s family-friendly (you don’t taste the hidden veggies!)
  • It’s stovetop (with options for adding crunch in the oven)
  • It makes good leftovers

Reader rating

★★★★★

“Life changing recipe. I’ve been on the lookout for the *perfect* mac and cheese recipe for years and I can stop looking. I think about this recipe at night while I am trying to fall asleep.” —Kellie

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Bowls of macaroni and cheese with a fork, featuring creamy yellow cheese sauce, set on a green surface with a striped cloth nearby.

Key ingredients

Jump to the recipe card for the quantities.

  • Butternut Squash: Sweet, earthy, and loaded with beta-carotene. It turns silky smooth when blended.
  • Cheddar Cheese: Adds that classic mac and cheese bite while keeping the sauce rich. Freshly grated melts better than pre-shredded.
  • Plain Yogurt: My go-to for creaminess without cream. It adds subtle tang and keeps the sauce light and glossy.
  • Onion + Garlic: The flavor foundation. They balance the squash’s sweetness with savory depth.
  • Dijon Mustard: A quiet hero. Just a touch sharpens all the flavors (without making it taste like mustard).
  • Pasta: Any shape works, but short noodles like elbows, shells, or cavatappi cling to the sauce beautifully.

Cheese Swaps

While sharp cheddar adds a bold flavor, you can experiment with other types of cheeses like Gruyere, fontina, or even a smoked cheese for a unique twist.

Various labeled ingredients for butternut squash mac and cheese are arranged on a green surface, including pasta, broth, onion, garlic, cheddar, oil, yogurt, butternut squash, and salt and pepper.

Switch it up

  • Add greens: Stir in a handful of spinach or kale before serving for color and nutrients.
  • Extra indulgent: Mix in a bit of Gruyère or fontina with the cheddar for a deeper, nutty flavor.
  • Roasted garlic: Swap in roasted garlic for a mellower flavor that pairs perfectly with the squash.
  • Roast the squash: Rather than simmering the butternut, roasting it will give the mac a deeper more caramelized flavor.

Stovetop Butternut Squash Mac And Cheese (25 Minutes)

5 from 10 ratings
Prep: 10 minutes
Cook: 15 minutes
Total: 25 minutes
Servings: 4 servings
This creamy Butternut Squash Mac and Cheese is ready in under 25 minutes—lightened up with real squash for cozy, fall flavor without the heaviness.

Ingredients 

  • 1 Tbsp olive oil, 15 mL
  • ½ cup diced white onion, about ½ of a medium onion
  • 2 cloves garlic, minced
  • 1 ½ cups vegetable broth, 354 mL
  • 3 cups diced butternut squash, about half of a medium squash
  • 1 tsp salt
  • ¼ tsp pepper
  • 1 lb uncooked pasta, any shape, 453 g
  • 1 cup shredded sharp cheddar cheese, 100 g
  • ½ cup plain yogurt, 120 g
  • 1 tsp dijon mustard, optional
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Instructions 

  • Flavor Base: Add 1 Tbsp olive oil to a large pot and set over medium heat. Add ½ cup diced white onion and 2 cloves garlic, cooking until soft and fragrant, about 5 minutes. 
    Diced onions being sautéed in a large pot with a wooden spoon on a green countertop.
  • Butternut: Add 1 ½ cups vegetable broth, 3 cups diced butternut squash, 1 tsp salt, and ¼ tsp pepper. Cover and let simmer until butternut is tender, 7 to 10 minutes.
    A pot on a green surface containing diced butternut squash, chopped onions, and liquid, with a wooden spoon.
  • Cook Pasta: Meanwhile, boil 1 lb uncooked pasta according to instructions on package, cooking until al dente.
    Cooked pasta draining in a white colander with black handles, placed on a green countertop.
  • Blend: Using a handheld immersion blender (or working carefully with a countertop blender), puree the butternut mixture until smooth.
    An immersion blender is placed in a pot containing cooked, cubed butternut squash in a yellowish liquid on a green surface.
  • Mix: Mix the butternut puree into the pasta. Add 1 cup shredded sharp cheddar cheese and stir to evenly combine, then add ½ cup plain yogurt and continue stirring until evenly mixed. Taste and add more salt and pepper as needed. Optionally stir in dijon mustard*.
    A pot of macaroni and cheese with a wooden spoon and a dollop of sour cream on top, set on a green surface.

Notes

*Dijon mustard in mac in cheese is one of my favorite mac & cheese hacks! While it doesn’t actually add any detectable mustard flavor, it elevates the flavors of the cheese and salt. Try it next time you make this!
Storage: Mac and cheese is always best enjoyed right away, but you can keep it in the fridge in an airtight container for up to 3 days. Just reheat it on the stovetop slowly and with a splash of cream or broth to rehydrate the sauce.
Can I make this recipe gluten-free?
Yes, simply swap out regular pasta for a gluten-free variety. Ensure the broth and any other ingredients you use are also gluten-free.
What can I substitute for yogurt?
The best replacement for the yogurt is cream cheese, though it does make this mac and cheese a bit more decadent. You can also use sour cream or a dairy-free alternative like coconut or almond yogurt.

Nutrition

Serving: 1serving | Calories: 491kcal | Carbohydrates: 69.2g | Protein: 20.1g | Fat: 16.5g | Saturated Fat: 7.8g | Cholesterol: 36mg | Sodium: 633mg | Potassium: 559mg | Fiber: 4.9g | Sugar: 7.7g | Calcium: 240mg | Iron: 3.4mg

Nutrition information calculated by Sarah Bond, degreed nutritionist.

did you make this?Leave a comment below and tag @liveeatlearn on social media! I love seeing what you’ve made!

Make It Baked

Prefer a baked mac and cheese because you like a little crunch? To make a baked butternut squash mac and cheese:

  1. Prepare this recipe as described above, being sure to cook the pasta just barely to al dente (it should still have a little bite to it).
  2. Transfer mac and cheese to a greased baking dish.
  3. Make a breadcrumb topping. Combine panko breadcrumbs with a little melted butter and spread it evenly over the mac and cheese.
  4. Broil! Place in the oven and set to “broil”. Watch closely, letting it cook just until breadcrumbs are golden brown and crisp, about 5 minutes.

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14 Comments

  1. Elizabeth says:

    This receipt looks amazing! Any thoughts on cheese substitutes? Cheddar cheese is not always easily accessible where we are currently living. Thanks!

    1. Sarah says:

      Thanks Elizabeth! If you can get yours hands on gouda, gruyere, or fontina those would all work great 😀

  2. Be erly Andrea says:

    The pictures of making the butter not squash pasta mac & cheese were excellent so wish me good luck in making it thank you so much!!!!
    Beverly

    1. Sarah says:

      Thanks so much, Bev! Enjoy!! 😀

  3. Namita says:

    5 stars
    Made this last night, and OH MY GOD! It’s so amazing! Tastes as good as the real thing, so satisfying!

  4. Tiffany R says:

    5 stars
    I was a bit leery about a mac and cheese that skimps on the cheese in favor of a vegetable I didn’t inherently think of for something like this, but I gave it a go anyways and I’m glad I did! I added some smoked paprika to the butternut squash puree to make sure it was fully incorporated and then mixed everything together. So tasty and, again, it’s something you can feel good about since it’s a healthier alternative to pure cheese and noodles.

    1. Sarah says:

      I’m so happy you gave it a shot (and even more so that you enjoyed!!) 😀

  5. Matthew says:

    5 stars
    Delicious, easy prep, and healthy to boot! I substituted wheat pasta for lentil pasta, and it really made it the complete meal. I also added some hot sauce and cilantro to top it off. Thanks for the lovely recipe and the easy directions!

  6. Lynn says:

    My husband grows butternut squash and have been eating for years. Just discovered a great hack to make peeling and cutting so much easier. Just microwave the whole squash for 5 minutes. Both peeling and cutting are so much easier.

    1. Sarah Bond says:

      That’s such a great idea, thanks for sharing Lynn!

  7. Viviane says:

    5 stars
    Delicious!!

  8. Kellie Shaffer says:

    5 stars
    Life changing recipe. I’ve been on the lookout for the *perfect* mac and cheese recipe for years and I can stop looking. It is lighter on dairy which is good for me, and healthier for my kids, which is good for them. And most importantly of all, it’s the most delicious mac & cheese I’ve ever tasted. I think about this recipe at night while I am trying to fall asleep.

    1. Sarah Bond says:

      Oh my gosh, this make me so happy to hear!! Enjoy!

  9. N. S. says:

    5 stars
    A much healthier take on mac and cheese, and one that does a good job including vegetables!